PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000266908
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 1180aa    MW: 132240 Da    PI: 6.2614
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000266908genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.21.4e-522994341128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    lp GfrF+Ptdeel+++yL+ k++g++ e+ +vi+e+d++++ePwdLpk   +k++++ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++s
  MDP0000266908 299 LPLGFRFRPTDEELINHYLRLKINGHDSEV-QVIPEIDVCRWEPWDLPKlsVIKSDDQEWFFFCPRDRKYPNGHRSNRATDAGYWKATGKDRTIKS 393
                    699************************999.99***************5458889999************************************** PP

            NAM  95 k.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +       ++ +vg+kktLvfy+grapkge+t+W+mheyr+
  MDP0000266908 394 RqckfatnSNGQVGMKKTLVFYRGRAPKGERTSWIMHEYRA 434
                    988888877778***************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-60290457IPR003441NAC domain
PROSITE profilePS5100557.55299457IPR003441NAC domain
PfamPF023659.7E-27300433IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1180 aa     Download sequence    Send to blast
MWFNLNKKKS FTRHNCWDIV KHTPKYKVLP SGPQVELNKT PLQKPTTEES PLKASLETQE  60
TPRPISVTPN DPFLLSTRRR PQSSLLYIRH SNHLVVFSAA WKLIVVSEDS KSPLMQIAAQ  120
MVRKVVACIC SSKAEIYIIF PKLAGQICIV RLHGILASFP ESRQGIRRGG SDYVKRLSRI  180
IGVLGIGTAL RLALEFLHEW SLRRAVQRVD ASHTNVPLGY HPAFRRRADT WRLVSLPLKQ  240
RCQRTRSSTT HARSTAPSQN PEASGQLSPP IRSLGFEKLG KLRKISGGRY MAELSMESLP  300
LGFRFRPTDE ELINHYLRLK INGHDSEVQV IPEIDVCRWE PWDLPKLSVI KSDDQEWFFF  360
CPRDRKYPNG HRSNRATDAG YWKATGKDRT IKSRQCKFAT NSNGQVGMKK TLVFYRGRAP  420
KGERTSWIMH EYRATQKELD GTAPSQGAFV LCRLFHKPEE KADEPKHDEV EQTGLSPTTT  480
KSSPDESSDI VQETATSEMQ GEKQSEGIMR WLTDKSDKVT PDAFCQLPVD SFMASDMEDH  540
GAVETGIQGH LTMEENPAFY ESLGGLDDSK DFSPLHSQIN AELEHYVGSP FTSDFGNYDN  600
VLHFQDGTCE RDVPLKELFD EFSNSHYGSS CEESTSQKNL VVGNETYLSG HACTTLPGNS  660
CFNGAWGNTD AKIAQNDLQR RASGLYNEQF GSEDLQNTSF GYWQAKAQAS FDDRKPRMGN  720
MTDSYLSQCS FAEQFPVSSV NDVSNSLHGS TGWKNLDNHS GDDVGGTGIK TRARHPQLQP  780
NIDNFVDQGS AARRLHLLVD RSVWSITNGN ESDENYSTEE DEVQSIIAET REDIQQSPTS  840
DEQEEEHAIF SNKEEWSSTN NSINHGFDPD GRSGIMIRTR QPQQRSNSDS SVTQDTAHRR  900
IGLQMNISYG SIADSNVRET DYGGEDEVES ANTEAREAIQ QSLASDEHEK EHAEINDKED  960
LATMKNSVNY DSNVVGRSGI KMKAPEPQQP LSSGDSATQA PASRRIRLQM STSPRSVVDS  1020
NVRDTTPAEE DNVQSTIYEV RMVNEANISI VYTYVRCSHQ ILSEQYCPLQ VKEATEKISN  1080
FDEQEAESRL LKSDMGRKIT DGSPTELVDE KRAAEEAPIT LRLRTGRDGA SPSSHMGLSV  1140
SSKELPKHHG LSPTFVILVG IPLAVTLFIA FSGIWMTFRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-4529445712165NO APICAL MERISTEM PROTEIN
1ut4_B1e-4529445712165NO APICAL MERISTEM PROTEIN
1ut7_A1e-4529445712165NO APICAL MERISTEM PROTEIN
1ut7_B1e-4529445712165NO APICAL MERISTEM PROTEIN
3swm_A1e-4529445715168NAC domain-containing protein 19
3swm_B1e-4529445715168NAC domain-containing protein 19
3swm_C1e-4529445715168NAC domain-containing protein 19
3swm_D1e-4529445715168NAC domain-containing protein 19
3swp_A1e-4529445715168NAC domain-containing protein 19
3swp_B1e-4529445715168NAC domain-containing protein 19
3swp_C1e-4529445715168NAC domain-containing protein 19
3swp_D1e-4529445715168NAC domain-containing protein 19
4dul_A1e-4529445712165NAC domain-containing protein 19
4dul_B1e-4529445712165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.132600.0bud| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008360722.10.0PREDICTED: uncharacterized protein LOC103424418
TrEMBLD9ZJA70.0D9ZJA7_MALDO; NAC domain class transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136251825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.11e-127NAC 014